OMWS: A Web Service Interface for Ecological Niche Modelling

Authors

  • Renato De Giovanni Centro de Referência em Informação Ambiental, CRIA
  • Erik Torres Universitat Politècnica de València
  • Rafael Burlamaqui Amaral Universidade Federal Fluminense
  • Ignacio Blanquer Universitat Politècnica de València
  • Vinod Rebello Universidade Federal Fluminense
  • Vanderlei Perez Canhos Centro de Referência em Informação Ambiental, CRIA

DOI:

https://doi.org/10.17161/bi.v10i0.4853

Keywords:

workflow, high-throughput computing, openModeller

Abstract

Ecological niche modelling (ENM) experiments often involve a high number of tasks to be performed. Such tasks may consume a significant amount of computing resources and take a long time to complete, especially when using personal computers. OMWS is a Web service interface that allows more powerful computing back-ends to be remotely exploited by other applications to carry out ENM tasks. Its latest version includes a new operation that can be used to specify complex workflows in a single request, adding the possibility of using workflow management systems on parallel computing back-end. In this paper we describe the OMWS protocol and compare its most recent version with the previous one by running the same ENM experiment using two functionally equivalent clients, each designed for one of the OMWS interface versions. Different back-end configurations were used to investigate how the performance scales for each protocol version when more processing power is made available. Results show that the new version outperforms (in a factor of 2) the previous one when more computing resources are used.

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Author Biographies

  • Erik Torres, Universitat Politècnica de València
    Institute of Instrumentation for Molecular Imaging (I3M)
  • Rafael Burlamaqui Amaral, Universidade Federal Fluminense
    Instituto de Computação
  • Ignacio Blanquer, Universitat Politècnica de València
    Institute of Instrumentation for Molecular Imaging (I3M)
  • Vinod Rebello, Universidade Federal Fluminense
    Instituto de Computação

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Published

2015-09-04

Issue

Section

Articles (peer-reviewed)

How to Cite

Giovanni, Renato De, Erik Torres, Rafael Burlamaqui Amaral, Ignacio Blanquer, Vinod Rebello, and Vanderlei Perez Canhos. 2015. “OMWS: A Web Service Interface for Ecological Niche Modelling”. Biodiversity Informatics 10 (September). https://doi.org/10.17161/bi.v10i0.4853.